 |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
| Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_011074654.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
| Family | ARF | ||||||||
| Protein Properties | Length: 1012aa MW: 112083 Da PI: 5.0717 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 74.2 | 1.5e-23 | 146 | 247 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
f+k+lt sd++++g +++p++ ae+ + ++++ ++l+++d++ ++W +++iyr++++r++lt+GW+ Fv a++L++gD v+F ++++
XP_011074654.1 146 FCKTLTASDTSTHGGFSVPRRAAEKLfpqldySTQPPT-QELVVRDLHDNTWAFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDAVLFI--RDEK 237
99*********************999****98444444.49************************************************..4567 PP
E..EEEEE-S CS
B3 90 felvvkvfrk 99
+l+++v+r
XP_011074654.1 238 SQLMLGVRRV 247
7789999985 PP
| |||||||
| 2 | Auxin_resp | 119.4 | 2.8e-39 | 272 | 355 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaa+++s+F+++YnPra++seFv++++k++ka++ +++++GmRf m+fete+ss+rr++Gt++g+sd+dp+rWpnSkWrsL+
XP_011074654.1 272 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKAVYgTQLAIGMRFGMMFETEESSKRRYMGTIIGISDVDPLRWPNSKWRSLQ 355
79**********************************9*********************************************97 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 6.8E-47 | 133 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 1.3E-40 | 139 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 3.09E-21 | 145 | 246 | No hit | No description |
| Pfam | PF02362 | 5.2E-21 | 146 | 247 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 2.1E-22 | 146 | 248 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 12.957 | 146 | 248 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 4.3E-34 | 272 | 355 | IPR010525 | Auxin response factor |
| Pfam | PF02309 | 2.9E-8 | 893 | 980 | IPR033389 | AUX/IAA domain |
| PROSITE profile | PS51745 | 25.774 | 894 | 977 | IPR000270 | PB1 domain |
| SuperFamily | SSF54277 | 1.31E-8 | 913 | 972 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009725 | Biological Process | response to hormone | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0005515 | Molecular Function | protein binding | ||||
| Sequence ? help Back to Top |
|---|