PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011074654.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 1012aa    MW: 112083 Da    PI: 5.0717
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011074654.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23146247199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       + ++++ ++l+++d++ ++W +++iyr++++r++lt+GW+ Fv a++L++gD v+F   ++++
  XP_011074654.1 146 FCKTLTASDTSTHGGFSVPRRAAEKLfpqldySTQPPT-QELVVRDLHDNTWAFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDAVLFI--RDEK 237
                     99*********************999****98444444.49************************************************..4567 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++v+r 
  XP_011074654.1 238 SQLMLGVRRV 247
                     7789999985 PP

2Auxin_resp119.42.8e-39272355183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+++YnPra++seFv++++k++ka++ +++++GmRf m+fete+ss+rr++Gt++g+sd+dp+rWpnSkWrsL+
  XP_011074654.1 272 AAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKAVYgTQLAIGMRFGMMFETEESSKRRYMGTIIGISDVDPLRWPNSKWRSLQ 355
                     79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.8E-47133275IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-40139260IPR015300DNA-binding pseudobarrel domain
CDDcd100173.09E-21145246No hitNo description
PfamPF023625.2E-21146247IPR003340B3 DNA binding domain
SMARTSM010192.1E-22146248IPR003340B3 DNA binding domain
PROSITE profilePS5086312.957146248IPR003340B3 DNA binding domain
PfamPF065074.3E-34272355IPR010525Auxin response factor
PfamPF023092.9E-8893980IPR033389AUX/IAA domain
PROSITE profilePS5174525.774894977IPR000270PB1 domain
SuperFamilySSF542771.31E-8913972No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top